PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015467
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 204aa    MW: 22632.5 Da    PI: 4.9654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015467genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-193282155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + ++GVr ++ +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++aa+++++g
  Cla015467 32 PVFRGVRKRS-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDAAALCIKG 82
               579****888.**********843...6***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-133282IPR001471AP2/ERF domain
PROSITE profilePS5103222.7213390IPR001471AP2/ERF domain
SMARTSM003801.6E-343396IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-203390IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-313391IPR001471AP2/ERF domain
PRINTSPR003673.8E-103445IPR001471AP2/ERF domain
CDDcd000181.14E-203492No hitNo description
PRINTSPR003673.8E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAKPKNSNPQ HKSNPLPVTP TGKKPRDCNK HPVFRGVRKR SWGKWVSEIR QPRKKSRIWL  60
GTFPTPEMAA RAHDAAALCI KGDSAILNYP ELAEFLPRPA SLMPHDVQAA AAKAAAMVNL  120
NSSALPSPSE EEEEELSEIV ELPNIEEDFG TVSLNEFGLV TESWEWWESV AMPLAAEFGC  180
GYFSDQTAAE ESSYPSSFYG VLWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142990363ATERF1
3gcc_A1e-142990363ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462184.11e-105PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0K6P81e-100A0A0A0K6P8_CUCSA; Uncharacterized protein
STRINGPOPTR_0003s04920.14e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2472433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-45ERF family protein